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Fig. 2 | BMC Bioinformatics

Fig. 2

From: CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels

Fig. 2

Flowchart of the analysis pipeline. At the beginning of an analysis run, images and (optional) segmentation masks are read into CytoSpectre. If segmentation masks are provided, descriptors of cellular morphology are computed before estimation of the PSD. Spectral regions of interest (outlined in red) corresponding to mixed and detail components are then extracted from the PSD. Orientation and wavelength analysis is performed for each component and the obtained results are typically exported for further study

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