From: Novel gene sets improve set-level classification of prokaryotic gene expression data
Gene-set type | # sets | # genes | # of genes in set | ||
---|---|---|---|---|---|
Median | Mean | Max. | |||
Operon Based | |||||
Operon (OPR) | 2649 | 4524 | 1 | 1.708 | 16 |
Transcriptional unit (TU) | 3213 | 4524 | 1 | 1.685 | 16 |
Continuous subsequence (COPR) | 3164 | 4524 | 1 | 1.430 | 12 |
Transcription Factor Based | |||||
Transcription factor (TF) | 186 | 1685 | 7 | 24.720 | 534 |
Regulon (REG) | 459 | 1685 | 2 | 3.671 | 61 |
Strict regulon (SREG) | 541 | 1685 | 2 | 3.115 | 51 |
Conventional | |||||
GO+KEGG | 260 | 2734 | 12 | 31.830 | 847 |