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Table 1 Topological characteristics of the A. thaliana PPIN

From: Inferring plant microRNA functional similarity using a weighted protein-protein interaction network

Database

Proteins No. (%)

Interactions No. (%)

Degree

Max

Min

Average

TAIR

7,115 (64.8 %)

70,699 (79.9 %)

737

1

19.87

AtPIN

2,807 (25.6 %)

6,204 (7.0 %)

134

1

4.42

PAIR

2,776 (25.3 %)

5,619 (6.4 %)

131

1

4.05

BioGRID

6,943 (63.2 %)

16,463 (18.6 %)

1297

1

4.74

IntAct

4,172 (38.0 %)

9,480 (10.7 %)

259

1

4.54

Integrated

10,985 (100 %)

88,484 (100 %)

1304

1

16.11

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BMC Bioinformatics

ISSN: 1471-2105

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