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Table 1 Clustering results for the Gap Procedure on simulated data

From: The Gap Procedure: for the identification of phylogenetic clusters in HIV-1 sequence data

Data

Average

Sim

N

G

Time (in sec)

# clusters

# singletons

ARI

1

100

4

0.1108

4.25

0.04

0.9854

2

150

6

0.1370

6.39

0.04

0.9856

3

500

20

0.6073

22.49

0.13

0.9750

4

1250

50

6.6194

58.11

0.43

0.9694

  1. The average clustering results (taken over 100 runs) obtained by the Gap Procedure when applied to the simulated data. The dissimilarity matrix was calculated using the aK80 distance formula and sequences (of length 800) were mutated according to a GTR + I + Γ model
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BMC Bioinformatics

ISSN: 1471-2105

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