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Table 3 List of the top ranking features for omnivores and vegetarians in the 16S data collected from the American Gut Project detected using Random Forests

From: Fizzy: feature subset selection for metagenomics

(Feature rank) Operation taxonomic unit classification (OTU ID)
(F1) Bacteroidetes, Bacteroidia, Bacteroidales, Bacteroidaceae, Bacteroides ovatus (GGID180606)
(F2) Bacteroidetes, Bacteroidia, Bacteroidales, Bacteroidaceae, Bacteroides fragilis (GGID4386507)
(F3) Firmicutes, Clostridia, Clostridiales, Lachnospiraceae, Roseburia (GGID4335815)
(F4) Actinobacteria, Actinobacteria, Actinomycetales, Corynebacteriaceae, Corynebacterium simulans (GGID912997)
(F5) Bacteroidetes, Bacteroidia, Bacteroidales, Rikenellaceae (GGID175375)
(F6) Firmicutes, Clostridia, Clostridiales, Lachnospiraceae (GGID194112)
(F7) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae (GGID189924)
(F8) Bacteroidetes, Bacteroidia, Bacteroidales, Bacteroidaceae, Bacteroides (GGID1105984)
(F9) Bacteroidetes, Bacteroidia, Bacteroidales, Bacteroidaceae, Bacteroides (GGID197367)
(F10) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae (GGID174818)
(F11) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae (GGID4324040)
(F12) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae (GGID197204)
(F13) Bacteroidetes, Bacteroidia, Bacteroidales, Bacteroidaceae, Bacteroides (GGID1944498)
(F14) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae (GGID196307)
(F15) Firmicutes, Clostridia, Clostridiales, Ruminococcaceae, Ruminococcus flavefaciens (GGID1122673)
  1. The number followed by “F” indicates the order the Random Forest selected the OTU and the “GGID” contains the Greengenes OTU ID from the taxonomic classification
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BMC Bioinformatics

ISSN: 1471-2105

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