Fig. 5From: Inferring intra-motif dependencies of DNA binding sites from ChIP-seq dataData set specific improvements. We show Ψ d for PMMs of different order for all data sets that contain at least one motif, each averaged over the ten cross-validation iterations. For the vast majority of data sets, we find that taking into account intra-motif dependencies via PMMs improves motif discovery substantiallyBack to article page