From: miRA: adaptable novel miRNA identification in plants using small RNA sequencing data
Organism and | Identification | miRNA reference data | N recall | RR | N tot | SPC | |
---|---|---|---|---|---|---|---|
library reference | method | Source | N ref | Â | Â | Â | Â |
Chlamydomonas reinhardtii | Â | Â | Â | Â | Â | Â | Â |
Simulated | miRA | Molnar et al. [8] | 20 | 12 | 0.60 | 19 | 1.0 |
Simulated | miR-PREFeR | Molnar et al. [8] | 20 | 0 | 0.00 | 0 | 1.0 |
Loizeau et al. [36] | miRA | Molnar et al. [8] | 47 | 39 | 0.83 | 281 | – |
Loizeau et al. [36] | miRDP | Molnar et al. [8] | 47 | 14 | 0.30 | 964 | – |
Loizeau et al. [36] | miR-PREFeR | Molnar et al. [8] | 47 | 29 | 0.62 | 60 | – |
Molnar et al. [8] | miRA | Molnar et al. [8] | 15 | 12 | 0.80 | 175 | – |
Molnar et al. [8] | miRDP | Molnar et al. [8] | 15 | 7 | 0.47 | 51 | – |
Molnar et al. [8] | miR-PREFeR | Molnar et al. [8] | 15 | 3 | 0.20 | 6 | – |
Arabidopsis thaliana | Â | Â | Â | Â | Â | Â | Â |
Pooled Athl-2 [28] | miRA | miRBase | 246 | 122 | 0.50 | 517 | – |
Pooled Athl-2 [28] | miRDP | miRBase | 246 | 80 | 0.12 | 695 | – |
Pooled Athl-2 [28] | miR-PREFeR | miRBase | 246 | 119 | 0.48 | 138 | – |
Volvox carteri | Â | Â | Â | Â | Â | Â | Â |
Novel data | miRA | – | 0 | – | – | 213 | – |