Fig. 3
From: Reconstruction of 3D genome architecture via a two-stage algorithm
RMSDs for a series of sampling proportions and schemes. RMSD comparisons across a range (0.10,0.20,…,1.0) of second stage sampling proportions and schemes (equi-spaced, aggregated and first principal component based) for reconstructions from human GM06990 lymphoblastoid cell lines [5]. Hybrid and non-hybrid algorithms and MDS weighting options are also contrasted. Comparisons are performed with respect to a referent reconstruction based on equi-spaced sampling at a proportion of 1.0, under the non-hybrid algorithm with inverse squared distance weighting