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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Reconstruction of 3D genome architecture via a two-stage algorithm

Fig. 3

RMSDs for a series of sampling proportions and schemes. RMSD comparisons across a range (0.10,0.20,…,1.0) of second stage sampling proportions and schemes (equi-spaced, aggregated and first principal component based) for reconstructions from human GM06990 lymphoblastoid cell lines [5]. Hybrid and non-hybrid algorithms and MDS weighting options are also contrasted. Comparisons are performed with respect to a referent reconstruction based on equi-spaced sampling at a proportion of 1.0, under the non-hybrid algorithm with inverse squared distance weighting

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