|  |  | Length | 50 | 100 | 150 | 300 | 500 | 1000 |
---|---|---|---|---|---|---|---|---|---|
Assembly | Mapper | Stringency | MAPQ | Â | Â | Â | Â | Â | Â |
Allpaths | Bowtie2 | Relaxed | 0 | 3.743 | 3.736 | 3.807 | 4.084 | 3.863 | 3.975 |
Allpaths | BWA | Relaxed | 0 | 3.692 | 3.752 | 3.823 | 3.906 | 3.922 | 3.947 |
Allpaths | Bowtie2 | Strict | 0 | 3.349 | 3.445 | 3.480 | 3.529 | 3.571 | 3.621 |
Allpaths | BWA | Strict | 0 | 1.729 | 1.755 | 1.760 | 1.759 | 1.758 | 1.739 |
Control | Bowtie2 | Relaxed | 0 | 0.000 | 0.000 | 0.000 | 3.856 | 0.920 | 0.226 |
Control | BWA | Relaxed | 0 | 1.547 | 1.112 | 0.736 | 0.254 | 0.000 | 0.369 |
Control | Bowtie2 | Strict | 0 | 0.000 | 0.000 | 0.000 | 0.953 | 0.000 | 0.000 |
Control | BWA | Strict | 0 | 1.248 | 0.866 | 0.595 | 0.270 | 0.075 | 0.075 |
Velvet | Bowtie2 | Relaxed | 0 | 2.960 | 3.399 | 3.572 | 4.084 | 3.691 | 3.838 |
Velvet | BWA | Relaxed | 0 | 2.972 | 3.313 | 3.491 | 3.628 | 3.720 | 3.799 |
Velvet | Bowtie2 | Strict | 0 | 3.091 | 3.504 | 3.582 | 3.618 | 3.638 | 3.658 |
Velvet | BWA | Strict | 0 | 1.779 | 1.806 | 1.834 | 1.834 | 1.825 | 1.798 |
Allpaths | Bowtie2 | Relaxed | 20 | 3.615 | 3.589 | 3.668 | 3.917 | 3.716 | 3.857 |
Allpaths | BWA | Relaxed | 20 | 3.594 | 3.695 | 3.775 | 3.880 | 3.882 | 3.914 |
Allpaths | Bowtie2 | Strict | 20 | 3.143 | 3.306 | 3.366 | 3.448 | 3.507 | 3.562 |
Allpaths | BWA | Strict | 20 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Control | Bowtie2 | Relaxed | 20 | 0.000 | 0.000 | 0.000 | 3.451 | 2.497 | 2.246 |
Control | BWA | Relaxed | 20 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Control | Bowtie2 | Strict | 20 | 0.000 | 0.000 | 0.000 | 0.648 | 0.000 | 0.000 |
Control | BWA | Strict | 20 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Velvet | Bowtie2 | Relaxed | 20 | 2.322 | 3.002 | 3.281 | 3.842 | 3.519 | 3.733 |
Velvet | BWA | Relaxed | 20 | 2.438 | 3.018 | 3.300 | 3.492 | 3.637 | 3.748 |
Velvet | Bowtie2 | Strict | 20 | 2.682 | 3.292 | 3.429 | 3.486 | 3.536 | 3.590 |
Velvet | BWA | Strict | 20 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Sed = 0.02191 | Â | Â | Â | Â | Â | Â | Â | Â | Â |