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Table 6 MAPQ and variant caller interaction. L o g 10-transformed means for the interaction between MAPQ filter level and variant caller

From: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

  Variant caller FreeBayes GATK
MAPQ    
0   2.8277 1.7635
20   1.8287 1.8830
Sed = 0.00365