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Table 6 MAPQ and variant caller interaction. L o g 10-transformed means for the interaction between MAPQ filter level and variant caller

From: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

 

Variant caller

FreeBayes

GATK

MAPQ

   

0

 

2.8277

1.7635

20

 

1.8287

1.8830

Sed = 0.00365

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