Table 3 Comparing AlignFS, Genewise, AlignWise and ESTscan at producing ORFs
From: AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts
Program | Total | Accurate | Inaccurate | Mean CDS coverage (%) |
|---|---|---|---|---|
AlignFS | 974 | 765 | 209 | 87.43 |
Genewise | 974 | 630 | 344 | 99.69 |
AlignWise | 974 | 808 | 166 | 91.87 |
AlignWise (fast) | 972 | 806 | 166 | 91.98 |
AlignFS (RefSeq) | 989 | 942 | 47 | 96.57 |
Genewise (RefSeq) | 989 | 613 | 376 | 104.36 |
AlignWise (RefSeq) | 989 | 880 | 109 | 98.49 |
ESTscan | 963 | 259 | 704 | 116.30 |