From: AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts
Program | Finds ORFs | Outputs DNA sequences | Able to correct frame-shifts | Accurate at short evolutionary distances | Accurate at long evolutionary distances |
---|---|---|---|---|---|
AlignWise | Y | Y | Y | Y | Y |
AlignFS | Y | Y | Y | Y | N |
Genewise | Y | Y | Y | N | Y |
ESTscan | Y | Y | Y | N | N |
TransDecoder | Y | Y | N | N/A | N/A |
OrfPredictor | Y | Y | N | N/A | N/A |
MACSE | Na | Y | Y | N/A | N/A |
BLASTx | Y | N | N | N/A | N/A |
ESTwise | Y | N | Y | N/A | N/A |