Table 1 Comparison of FoCo, CellProfiler and ImageJ
From: FoCo: a simple and robust quantification algorithm of nuclear foci
Software | Availability | # of parameters | Batch analysis | Visual feedback | Processing time | Extendability |
|---|---|---|---|---|---|---|
FoCo | Free GUI, but needs Matlab with IPT | 5 | Yes | Yes | 8 min | Yes |
CellProfiler | Free | >10 | Yes | Yes | 6 min + 9 min | No |
ImageJ | Free | 3 | Yes | No | 17 min +12 min | Yes |