Fig. 4
From: misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Insertion/deletion error in scaffold. a-b An insertion error at scaffold end. There are usually only single-end reads can be aligned to the erroneous ends. c An insertion error in the middle of two well-aligned segments whose paired-end reads have a larger insert size than normal regions. d A deletion error in the middle of two well-aligned segments whose paired-end reads have a smaller fragment size than normal regions. M L and M R are the left margin and the right margin for the insertion (or deletion) error, respectively