Fig. 5
From: misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Visualization of misFinder output for identifying assembly errors on E.coli simulated data. The running results of misFinder are shown using Circos [30]. The ideogram (green) shows the circularized selected scaffolds containing errors and structural variations. The scatter plot shows the identified assembly errors (red circles for misjoins, orange circles for indel errors) and correct assemblies (blue circles for correct indels, green circles for false misjoins) corresponding to structural variations by misFinder. There are 27 assembly errors and 8 correct assemblies corresponding to artificial SVs. The disagreement plot marks the disagreement for each base in scaffolds. The zero coverage plot marks each nucleotide with zero coverage. The multi-align ratio plot shows the ratio of multiple aligned reads for each region of 500Â bp, ranging from 0 to 1. The discordant ratio plot shows the discordant ratio of discordant read pairs for each 500-bp region in scaffolds, ranging from 0 to 1. The last plot shows the read coverage in scaffolds