Parameter | Case I, II | Case III |
---|---|---|
Parents (p) | 0, 1, 2, 3 | — |
Children (c) | 2, 3, 4, 5 | — |
Observed genes (n) | p+c | 50, 100 |
Hidden nodes (n h ) | 1 for case I, | 5 for n=50, |
 | II 0 for case | 10 for n=100 |
p bias | 0.65, 0.75, 0.85 | 0.65, 0.75, 0.85 |
Number of states | 3 | 3 |
Maximum delay (d) | 4 | 4 |
EM Iterations | 100 | 1000 |
Replicates | 20 | 40 |
Time points (T) | 100, 200, | 100, 200, 400, 800, 1000, |
 | 400, 800 | 1200, 1400, 1600 |
Number of short time series (K) | 4, 8, 16, 32 | 4, 8, 16, 32, 40, 48, 56, 64 |
p bias known? | Yes | No |