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Table 1 Parameter settings of synthetic data generation

From: High-order dynamic Bayesian Network learning with hidden common causes for causal gene regulatory network

Parameter

Case I, II

Case III

Parents (p)

0, 1, 2, 3

—

Children (c)

2, 3, 4, 5

—

Observed genes (n)

p+c

50, 100

Hidden nodes (n h )

1 for case I,

5 for n=50,

 

II 0 for case

10 for n=100

p bias

0.65, 0.75, 0.85

0.65, 0.75, 0.85

Number of states

3

3

Maximum delay (d)

4

4

EM Iterations

100

1000

Replicates

20

40

Time points (T)

100, 200,

100, 200, 400, 800, 1000,

 

400, 800

1200, 1400, 1600

Number of short time series (K)

4, 8, 16, 32

4, 8, 16, 32, 40, 48, 56, 64

p bias known?

Yes

No