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Table 1 Comparisons of call rates and concordance on HapMap samples for two allocation designs

From: M3-S: a genotype calling method incorporating information from samples with known genotypes

Design Item GenCall GenoSNP M3 M3-S
1:1 Call Rate 96.60 99.13 99.76 99.64
  Accuracy 96.41 98.47 99.23 99.33
2:1 Call Rate 96.57 99.15 99.77 99.65
  Accuracy 96.39 98.49 99.24 99.38
  1. Note: 2:1: 94 individuals are in the training set, and 47 subjects are in the testing group; 1:1: 71 individuals are in the training set, and 70 subjects are in the testing group; M3-S: M3 incorporating samples with known genotypes; Call Rate: the percentage of valid genotypes; Accuracy: the percentage of consistent genotype