M3-S: a genotype calling method incorporating information from samples with known genotypes

BMC Bioinformatics

Table 1 Comparisons of call rates and concordance on HapMap samples for two allocation designs

Design	Item	GenCall	GenoSNP	M³	M³-S
1:1	Call Rate	96.60	99.13	99.76	99.64
	Accuracy	96.41	98.47	99.23	99.33
2:1	Call Rate	96.57	99.15	99.77	99.65
	Accuracy	96.39	98.49	99.24	99.38

Note: 2:1: 94 individuals are in the training set, and 47 subjects are in the testing group; 1:1: 71 individuals are in the training set, and 70 subjects are in the testing group; M³-S: M³ incorporating samples with known genotypes; Call Rate: the percentage of valid genotypes; Accuracy: the percentage of consistent genotype

ISSN: 1471-2105