From: M3-S: a genotype calling method incorporating information from samples with known genotypes
SNPs | # SNP | Item | GenCall | GenoSNP | M3 | M3-S |
---|---|---|---|---|---|---|
MAF < 0.1 | 4364 | Call Rate | 95.89 | 99.02 | 99.70 | 99.59 |
 |  | Accuracy | 95.65 | 98.28 | 99.19 | 99.22 |
MAF < 0.05 | 2329 | Call Rate | 96.44 | 98.89 | 99.64 | 99.68 |
 |  | Accuracy | 96.15 | 98.02 | 99.08 | 99.28 |
MAF < 0.01 | 597 | Call Rate | 94.37 | 98.90 | 99.53 | 99.81 |
 |  | Accuracy | 93.89 | 97.28 | 98.60 | 99.23 |