Table 4 Comparisons of call rate and concordance of whole SNPs among GenCall, GenoSNP, M3 and M3-S
From: M3-S: a genotype calling method incorporating information from samples with known genotypes
Algorithm 1 | Algorithm 2 | Call rate (%) | Concordance (%) | |
|---|---|---|---|---|
| Â | Â | Algorithm 1 | Algorithm 2 | Â |
GenCall | GenoSNP | 96.71 | 99.12 | 99.71 |
GenCall | M3 | 96.71 | 99.71 | 99.85 |
GenCall | M3-S | 96.71 | 99.56 | 99.85 |
GenoSNP | M3 | 99.12 | 99.71 | 99.41 |
GenoSNP | M3-S | 99.12 | 99.56 | 99.45 |
M3 | M3-S | 99.71 | 99.56 | 99.57 |