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Table 5 Comparisons of Hardy-Weinberg Equilibrium Test among GenCall, GenoSNP, M3 and M3-S

From: M3-S: a genotype calling method incorporating information from samples with known genotypes

Population Num-Sample GenCall GenoSNP M3 M3-S M3-S M3-S
      600 1500 3000
AA I 2005 224 907 432 481 646 822
AA II 83 20 255 64 59 61 65
EA I 867 486 1024 636 639 690 770
EA II 158 40 348 109 98 106 129
  1. Note: AA I: African-Americans not of Hispanic Origin; AA II: African-Americans of Hispanic Origin; EA I: European Americans not of Hispanic Origin; EA II: European Americans of Hispanic Origin; Num-Sample: the number of subjects within each population