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Table 5 Comparisons of Hardy-Weinberg Equilibrium Test among GenCall, GenoSNP, M3 and M3-S

From: M3-S: a genotype calling method incorporating information from samples with known genotypes

Population

Num-Sample

GenCall

GenoSNP

M3

M3-S

M3-S

M3-S

     

600

1500

3000

AA I

2005

224

907

432

481

646

822

AA II

83

20

255

64

59

61

65

EA I

867

486

1024

636

639

690

770

EA II

158

40

348

109

98

106

129

  1. Note: AA I: African-Americans not of Hispanic Origin; AA II: African-Americans of Hispanic Origin; EA I: European Americans not of Hispanic Origin; EA II: European Americans of Hispanic Origin; Num-Sample: the number of subjects within each population