PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information

BMC Bioinformatics

Table 1 Total number of edges in method-dependent significant collaboration networks

	Total number of edges in predicted collaboration network
Sequence sets of RefSeq genes in	\(\left \|\mathcal {E}_{\text {PC-TraFF}_{20}}\right \|\)	\(\left \|\mathcal {E}_{\text {PC-TraFF}_{50}}\right \|\)	\(\left \|\mathcal {E}_{\text {PC-TraFF}_{100}}\right \|\)	\(\left \|\mathcal {E}_{\textit {MC}}\right \|\)	\(\left \|\mathcal {E}_{{CPM}}\right \|\)	\(\left \|\mathcal {E}_{\textit {CrmM}}\right \|\)
Genome-wide analysis	54	86	91	19	17	21
Breast cancer analysis	64	82	88	13	6	25

ISSN: 1471-2105