Fig. 8
From: Parameterizing sequence alignment with an explicit evolutionary model
Alignment accuracy and homology coverage for the Local Homology set of subregions embedded in nonhomologous sequence. Panel (a) displays the measures of alignment accuracy. Panel (b) displays coverage measures. The long-branch and short-branch parameterizations are identical to those described in Fig. 7. The results presented correspond to the evolutionary model AIF using the alignment program e2msa