Skip to main content

Table 1 Sample list in the ER data set shown together with their a priori assumed tumor proportions and the number of aligned reads. Four of the samples were used in the heterogeneity modeling and rest of the samples were used to determine a set of high quality binding sites for validation purposes

From: MixChIP: a probabilistic method for cell type specific protein-DNA binding analysis

Sample

Tumor percentage

Aligned Reads

Used in model

G1

> 70 %

12311074

G2

> 70 %

17696624

G4

N/A

14568154

G5.1

90 %

7887177

X

G5.2

90 %

16055168

X

G6

100 %

13429725

G7

70 %

22747279

X

G8

70 %

20227148

X