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Table 1 ECBC Pipeline Analysis on Non-host Reads of Samples Containing B. anthracis, F. tularensis, Y. pestis, B. pseudomallei, and B. mallei. Unknown samples were created, sequenced on 454, Ion Torrent, and Illumina platforms and processed (methods). Datasets were then analyzed using the ECBC pathogen detection pipeline. Table shading represents the positive and correct identification of the organism listed. Unshaded cells represent the lack of single-read identification matching to the pathogens spiked

From: Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform

  454 Ion Torrent Illumina
File size: 2.5gb File size:1.62gb File size: 5gb paired-read files
Pipeline runtime: 35m12s Pipeline runtime: 29m18s Pipeline runtime: 4hr11m
Agent Spiked Amounts Taxonomy Assignment ID Iterative Assembly ID Taxonomy Assignment ID Iterative Assembly ID Taxonomy Assignment ID Iterative Assembly ID
B. anthracis 1x106 CFU
F. tularensis 1x105 CFU
Y. pestis 1x104 CFU
B. pseudomallei 1x103 CFU      
B. mallei 1x102 CFU