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Table 2 Viral Samples And Non-host Reads. Samples collected from various sources were sequenced for pathogen detection. CUPP removed host reads, leaving non-host reads for further iterative and taxonomic analysis. Samples obtained had already been confirmed to contain or not contain indicated virus (methods)

From: Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform

Sample Host Tissue Viral Agent Total Reads non-host reads non-host reads (%)
28 Bat (Microchiroptera) Serum Hepatitis G virus 69558 1704 2 %
712 (Homo sapiens) Liver biopsy Lujo virus 55227 759 1 %
806 Bat (Microchiroptera) Gastro-intestinal tract - 9308 4752 51 %
808 Human (Homo sapiens) Liver biopsy Lujo virus 43090 4479 10 %
819 Bat (Microchiroptera) Gastro-intestinal tract Zaria-CoV 29182 12450 43 %
820 Bat (Microchiroptera) Gastro-intestinal tract Zaria-CoV 67808 14790 22 %
1164 Bat (Microchiroptera) Spleen parvovirus 72877 34935 48 %
1500 Dromedary Camel (Camelus dromedaries) Nasal Swab MERS-CoV 924389 888708 96 %
1501 Dromedary Camel (Camelus dromedaries) Nasal Swab MERS-CoV 866598 831820 96 %