Table 2 Viral Samples And Non-host Reads. Samples collected from various sources were sequenced for pathogen detection. CUPP removed host reads, leaving non-host reads for further iterative and taxonomic analysis. Samples obtained had already been confirmed to contain or not contain indicated virus (methods)
Sample | Host | Tissue | Viral Agent | Total Reads | non-host reads | non-host reads (%) |
|---|---|---|---|---|---|---|
28 | Bat (Microchiroptera) | Serum | Hepatitis G virus | 69558 | 1704 | 2 % |
712 | (Homo sapiens) | Liver biopsy | Lujo virus | 55227 | 759 | 1 % |
806 | Bat (Microchiroptera) | Gastro-intestinal tract | - | 9308 | 4752 | 51 % |
808 | Human (Homo sapiens) | Liver biopsy | Lujo virus | 43090 | 4479 | 10 % |
819 | Bat (Microchiroptera) | Gastro-intestinal tract | Zaria-CoV | 29182 | 12450 | 43 % |
820 | Bat (Microchiroptera) | Gastro-intestinal tract | Zaria-CoV | 67808 | 14790 | 22 % |
1164 | Bat (Microchiroptera) | Spleen | parvovirus | 72877 | 34935 | 48 % |
1500 | Dromedary Camel (Camelus dromedaries) | Nasal Swab | MERS-CoV | 924389 | 888708 | 96 % |
1501 | Dromedary Camel (Camelus dromedaries) | Nasal Swab | MERS-CoV | 866598 | 831820 | 96 % |