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Table 4 USAMRIID-WRAIR pipeline reanalysis for pathogen reads from Sample 28, 1164. Pathosphere’s ability to host multiple pipelines was tested using a pipeline designed by USAMRIID and WRAIR to analyze datasets from samples 28 and 1164. The reanalysis resulted in viral hits against the correct agent (sample 28) and against multiple viruses (sample 1164) with one correctly identified as a nearest neighbor

From: Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform

Reanalyzed Sample

Read length

NN hit

Sample 28

152

GB virus D strain 93 polyprotein precursor, gene, partial cds

692 total hits

231

GB virus D strain 93 polyprotein precursor, gene, partial cds

3 viral hits

246

GB virus D strain 93 polyprotein precursor, gene, partial cds

Sample 1164

171

Gray fox amdovirus NS1, NS2, NS3, VP1, and VP2 genes, complete_cds

4621 total hits

24 viral hits