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Table 4 USAMRIID-WRAIR pipeline reanalysis for pathogen reads from Sample 28, 1164. Pathosphere’s ability to host multiple pipelines was tested using a pipeline designed by USAMRIID and WRAIR to analyze datasets from samples 28 and 1164. The reanalysis resulted in viral hits against the correct agent (sample 28) and against multiple viruses (sample 1164) with one correctly identified as a nearest neighbor

From: Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform

Reanalyzed Sample Read length NN hit
Sample 28 152 GB virus D strain 93 polyprotein precursor, gene, partial cds
692 total hits
231 GB virus D strain 93 polyprotein precursor, gene, partial cds
3 viral hits
246 GB virus D strain 93 polyprotein precursor, gene, partial cds
Sample 1164 171 Gray fox amdovirus NS1, NS2, NS3, VP1, and VP2 genes, complete_cds
4621 total hits
24 viral hits