TY - JOUR AU - Henzler-Wildman, K. AU - Kern, D. PY - 2007 DA - 2007// TI - Dynamic personalities of proteins JO - Nature VL - 450 UR - https://doi.org/10.1038/nature06522 DO - 10.1038/nature06522 ID - Henzler-Wildman2007 ER - TY - JOUR AU - Frauenfelder, H. AU - Sligar, S. G. AU - Wolynes, P. G. PY - 1991 DA - 1991// TI - The energy landscapes and motions of proteins JO - Science VL - 254 UR - https://doi.org/10.1126/science.1749933 DO - 10.1126/science.1749933 ID - Frauenfelder1991 ER - TY - JOUR AU - Tsai, C. J. AU - del Sol, A. AU - Nussinov, R. PY - 2008 DA - 2008// TI - Allostery: Absence of a change in shape does not imply that allostery is not at play JO - J Mol Biol VL - 378 UR - https://doi.org/10.1016/j.jmb.2008.02.034 DO - 10.1016/j.jmb.2008.02.034 ID - Tsai2008 ER - TY - JOUR AU - Kern, D. AU - Zuiderweg, E. R. PY - 2003 DA - 2003// TI - The role of dynamics in allosteric regulation JO - Curr Opin Struct Biol VL - 13 UR - https://doi.org/10.1016/j.sbi.2003.10.008 DO - 10.1016/j.sbi.2003.10.008 ID - Kern2003 ER - TY - JOUR AU - Weber, G. PY - 1972 DA - 1972// TI - Ligand binding and internal equilibiums in proteins JO - Biochemistry VL - 11 UR - https://doi.org/10.1021/bi00755a028 DO - 10.1021/bi00755a028 ID - Weber1972 ER - TY - JOUR AU - Piana, S. AU - Klepeis, J. L. AU - Shaw, D. E. PY - 2014 DA - 2014// TI - Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations JO - Curr Opin Struct Biol VL - 24 UR - https://doi.org/10.1016/j.sbi.2013.12.006 DO - 10.1016/j.sbi.2013.12.006 ID - Piana2014 ER - TY - JOUR AU - Dror, R. O. AU - Dirks, R. M. AU - Grossman, J. P. AU - Xu, H. AU - Shaw, D. E. PY - 2012 DA - 2012// TI - Biomolecular simulation: A computational microscope for molecular biology JO - Annu Rev Biophys VL - 41 UR - https://doi.org/10.1146/annurev-biophys-042910-155245 DO - 10.1146/annurev-biophys-042910-155245 ID - Dror2012 ER - TY - JOUR AU - Vishveshwara, S. AU - Ghosh, A. AU - Hansia, P. PY - 2009 DA - 2009// TI - Intra and inter-molecular communications through protein structure network JO - Curr Protein Pept Sci VL - 10 UR - https://doi.org/10.2174/138920309787847590 DO - 10.2174/138920309787847590 ID - Vishveshwara2009 ER - TY - JOUR AU - Boede, C. AU - Kovacs, I. AU - Szalay, M. AU - Palotai, R. AU - Korcsmaros, T. AU - Csermely, P. PY - 2007 DA - 2007// TI - Network analysis of protein dynamics JO - {FEBS} Lett VL - 581 UR - https://doi.org/10.1016/j.febslet.2007.05.021 DO - 10.1016/j.febslet.2007.05.021 ID - Boede2007 ER - TY - JOUR AU - Tiberti, M. AU - Invernizzi, G. AU - Lambrughi, M. AU - Inbar, Y. AU - Schreiber, G. AU - Papaleo, E. PY - 2014 DA - 2014// TI - Pyinteraph: A framework for the analysis of interaction networks in structural ensembles of proteins JO - J Chem Inf Model VL - 54 UR - https://doi.org/10.1021/ci400639r DO - 10.1021/ci400639r ID - Tiberti2014 ER - TY - JOUR AU - Skjærven, L. AU - Yao, X. Q. AU - Scarabelli, G. AU - Grant, B. J. PY - 2014 DA - 2014// TI - Integrating protein structural dynamics and evolutionary analysis with bio3d JO - BMC Bioinformatics VL - 15 UR - https://doi.org/10.1186/s12859-014-0399-6 DO - 10.1186/s12859-014-0399-6 ID - Skjærven2014 ER - TY - JOUR AU - Bhattacharyya, M. AU - Bhat, C. R. AU - Vishveshwara, S. PY - 2013 DA - 2013// TI - An automated approach to network features of protein structure ensembles JO - Protein Sci Publication Protein Soc VL - 22 ID - Bhattacharyya2013 ER - TY - JOUR AU - Seeber, M. AU - Felline, A. AU - Raimondi, F. AU - Muff, S. AU - Friedman, R. AU - Rao, F. PY - 2011 DA - 2011// TI - Wordom: A user-friendly program for the analysis of molecular structures, trajectories, and free energy surfaces JO - J Comput Chem VL - 32 UR - https://doi.org/10.1002/jcc.21688 DO - 10.1002/jcc.21688 ID - Seeber2011 ER - TY - JOUR AU - Wriggers, W. AU - Stafford, K. A. AU - Shan, Y. AU - Piana, S. AU - Maragakis, P. AU - Lindorff-Larsen, K. PY - 2009 DA - 2009// TI - Automated event detection and activity monitoring in long molecular dynamics simulations JO - J Chem Theory Comput VL - 5 UR - https://doi.org/10.1021/ct900229u DO - 10.1021/ct900229u ID - Wriggers2009 ER - TY - JOUR AU - Monod, J. AU - Wyman, J. AU - Changeux, J. P. PY - 1965 DA - 1965// TI - On the nature of allosteric transitions: a plausible model JO - J Mol Biol VL - 12 UR - https://doi.org/10.1016/S0022-2836(65)80285-6 DO - 10.1016/S0022-2836(65)80285-6 ID - Monod1965 ER - TY - JOUR AU - Schrank, T. P. AU - Bolen, D. W. AU - Hilser, V. J. PY - 2009 DA - 2009// TI - Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0906510106 DO - 10.1073/pnas.0906510106 ID - Schrank2009 ER - TY - JOUR AU - McClendon, C. L. AU - Kornev, A. P. AU - Gilson, M. K. AU - Taylor, S. S. PY - 2014 DA - 2014// TI - Dynamic architecture of a protein kinase JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1418402111 DO - 10.1073/pnas.1418402111 ID - McClendon2014 ER - TY - JOUR AU - Invernizzi, G. AU - Tiberti, M. AU - Lambrughi, M. AU - Lindorff-Larsen, K. AU - Papaleo, E. PY - 2014 DA - 2014// TI - Communication routes in arid domains between distal residues in helix 5 and the dna-binding loops JO - PLoS Comput Biol VL - 10 UR - https://doi.org/10.1371/journal.pcbi.1003744 DO - 10.1371/journal.pcbi.1003744 ID - Invernizzi2014 ER - TY - JOUR AU - Allain, A. AU - de Beauchêne, I. C. AU - Langenfeld, F. AU - Guarracino, Y. AU - Laine, E. AU - Tchertanov, L. PY - 2014 DA - 2014// TI - Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2d and 3d graphs JO - Faraday Discussions VL - 169 UR - https://doi.org/10.1039/C4FD00024B DO - 10.1039/C4FD00024B ID - Allain2014 ER - TY - JOUR AU - Raimondi, F. AU - Felline, A. AU - Seeber, M. AU - Mariani, S. AU - Fanelli, F. PY - 2013 DA - 2013// TI - A mixed protein structure network and elastic network model approach to predict the structural communication in biomolecular systems: The pdz2 domain from tyrosine phosphatase 1e as a case study JO - J Chem Theory Comput VL - 9 UR - https://doi.org/10.1021/ct400096f DO - 10.1021/ct400096f ID - Raimondi2013 ER - TY - JOUR AU - Pandini, A. AU - Fornili, A. AU - Fraternali, F. AU - Kleinjung, J. PY - 2013 DA - 2013// TI - Gsatools: analysis of allosteric communication and functional local motions using a structural alphabet JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt326 DO - 10.1093/bioinformatics/btt326 ID - Pandini2013 ER - TY - JOUR AU - Blacklock, K. AU - Verkhivker, G. M. PY - 2013 DA - 2013// TI - Differential modulation of functional dynamics and allosteric interactions in the hsp90-cochaperone complexes with p23 and aha1: A computational study JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0071936 DO - 10.1371/journal.pone.0071936 ID - Blacklock2013 ER - TY - JOUR AU - Chiappori, F. AU - Merelli, I. AU - Colombo, G. AU - Milanesi, L. AU - Morra, G. PY - 2012 DA - 2012// TI - Molecular mechanism of allosteric communication in hsp70 revealed by molecular dynamics simulations JO - PLoS Comput Biol VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002844 DO - 10.1371/journal.pcbi.1002844 ID - Chiappori2012 ER - TY - JOUR AU - Papaleo, E. AU - Renzetti, G. AU - Tiberti, M. PY - 2012 DA - 2012// TI - Mechanisms of intramolecular communication in a hyperthermophilic acylaminoacyl peptidase: A molecular dynamics investigation JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0035686 DO - 10.1371/journal.pone.0035686 ID - Papaleo2012 ER - TY - JOUR AU - Laine, E. AU - Auclair, C. AU - Tchertanov, L. PY - 2012 DA - 2012// TI - Allosteric Communication across the Native and Mutated KIT Receptor Tyrosine Kinase JO - PLoS Comput Biol VL - 8 UR - https://doi.org/10.1371/journal.pcbi.1002661 DO - 10.1371/journal.pcbi.1002661 ID - Laine2012 ER - TY - JOUR AU - Zhang, Z. AU - Wriggers, W. PY - 2006 DA - 2006// TI - Local feature analysis: a statistical theory for reproducible essential dynamics of large macromolecules JO - Proteins VL - 64 UR - https://doi.org/10.1002/prot.20983 DO - 10.1002/prot.20983 ID - Zhang2006 ER - TY - JOUR AU - Chennubhotla, C. AU - Bahar, I. PY - 2007 DA - 2007// TI - Signal propagation in proteins and relation to equilibrium fluctuations JO - PLoS Comput Biol VL - 3 UR - https://doi.org/10.1371/journal.pcbi.0030172 DO - 10.1371/journal.pcbi.0030172 ID - Chennubhotla2007 ER - TY - JOUR AU - McDonald, I. K. AU - Thornton, J. M. PY - 1994 DA - 1994// TI - Satisfying hydrogen bonding potential in proteins JO - J Mol Biol VL - 238 UR - https://doi.org/10.1006/jmbi.1994.1334 DO - 10.1006/jmbi.1994.1334 ID - McDonald1994 ER - TY - JOUR AU - Kabsch, W. AU - Sander, C. PY - 1983 DA - 1983// TI - Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features JO - Biopolymers VL - 22 UR - https://doi.org/10.1002/bip.360221211 DO - 10.1002/bip.360221211 ID - Kabsch1983 ER - TY - STD TI - DeLano WL. The pymol molecular graphics system. 2002. ID - ref30 ER - TY - JOUR AU - Dixit, A. AU - Verkhivker, G. M. PY - 2011 DA - 2011// TI - Computational modeling of allosteric communication reveals organizing principles of mutation-induced signaling in abl and egfr kinases JO - PLoS Comput Biol VL - 7 UR - https://doi.org/10.1371/journal.pcbi.1002179 DO - 10.1371/journal.pcbi.1002179 ID - Dixit2011 ER - TY - JOUR AU - Brinda, K. V. AU - Vishveshwara, S. PY - 2005 DA - 2005// TI - A network representation of protein structures: implications for protein stability JO - Biophys J VL - 89 UR - https://doi.org/10.1529/biophysj.105.064485 DO - 10.1529/biophysj.105.064485 ID - Brinda2005 ER - TY - JOUR AU - Laine, E. AU - Chauvot de Beauchene, I. AU - Perahia, D. AU - Auclair, C. AU - Tchertanov, L. PY - 2011 DA - 2011// TI - Mutation D816V alters the internal structure and dynamics of c-KIT receptor cytoplasmic region: implications for dimerization and activation mechanisms JO - PLoS Comput Biol VL - 7 UR - https://doi.org/10.1371/journal.pcbi.1002068 DO - 10.1371/journal.pcbi.1002068 ID - Laine2011 ER - TY - JOUR AU - Berman, H. M. AU - Westbrook, J. AU - Feng, Z. AU - Gilliland, G. AU - Bhat, T. N. AU - Weissig, H. PY - 2000 DA - 2000// TI - The protein data bank JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.235 DO - 10.1093/nar/28.1.235 ID - Berman2000 ER - TY - JOUR AU - Butler, J. S. AU - Loh, S. N. PY - 2007 DA - 2007// TI - Zn(2+)-dependent misfolding of the p53 DNA binding domain JO - Biochemistry VL - 46 UR - https://doi.org/10.1021/bi062106y DO - 10.1021/bi062106y ID - Butler2007 ER - TY - JOUR AU - Butler, J. S. AU - Loh, S. N. PY - 2003 DA - 2003// TI - Structure, function, and aggregation of the zinc-free form of the p53 DNA binding domain JO - Biochemistry VL - 42 UR - https://doi.org/10.1021/bi026635n DO - 10.1021/bi026635n ID - Butler2003 ER - TY - JOUR AU - Marti-Renom, M. A. AU - Stuart, A. C. AU - Fiser, A. AU - Sanchez, R. AU - Melo, F. AU - Sali, A. PY - 2000 DA - 2000// TI - Comparative protein structure modeling of genes and genomes JO - Annu Rev Biophys Biomol Struct VL - 29 UR - https://doi.org/10.1146/annurev.biophys.29.1.291 DO - 10.1146/annurev.biophys.29.1.291 ID - Marti-Renom2000 ER - TY - JOUR AU - Case, D. AU - Darden, T. AU - Cheatham III, T. AU - Simmerling, C. AU - Wang, J. AU - Duke, R. PY - 2012 DA - 2012// TI - Amber 12 JO - Univ Calif San Francisco VL - 1 ID - Case2012 ER - TY - JOUR AU - Berendsen, H. J. AU - Postma, J. P. M. AU - van Gunsteren, W. F. AU - DiNola, A. AU - Haak, J. PY - 1984 DA - 1984// TI - Molecular dynamics with coupling to an external bath JO - J Chem Phys VL - 81 UR - https://doi.org/10.1063/1.448118 DO - 10.1063/1.448118 ID - Berendsen1984 ER - TY - JOUR AU - Loncharich, R. J. AU - Brooks, B. R. AU - Pastor, R. W. PY - 1992 DA - 1992// TI - Langevin dynamics of peptides: The frictional dependence of isomerization rates of n-acetylalanyl-N’-methylamide JO - Biopolymers VL - 32 UR - https://doi.org/10.1002/bip.360320508 DO - 10.1002/bip.360320508 ID - Loncharich1992 ER - TY - JOUR AU - Darden, T. AU - York, D. AU - Pedersen, L. PY - 1993 DA - 1993// TI - Particle mesh ewald: An nlog(n) method for ewald sums in large systems JO - J Chem Phys VL - 98 UR - https://doi.org/10.1063/1.464397 DO - 10.1063/1.464397 ID - Darden1993 ER - TY - JOUR AU - Lyman, E. AU - Zuckerman, D. M. PY - 2006 DA - 2006// TI - Ensemble-based convergence analysis of biomolecular trajectories JO - Biophys J VL - 91 UR - https://doi.org/10.1529/biophysj.106.082941 DO - 10.1529/biophysj.106.082941 ID - Lyman2006 ER - TY - JOUR AU - Chauvot de Beauchene, I. AU - Allain, A. AU - Panel, N. AU - Laine, E. AU - Trouve, A. AU - Dubreuil, P. PY - 2014 DA - 2014// TI - Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity JO - PLoS Comput Biol VL - 10 UR - https://doi.org/10.1371/journal.pcbi.1003749 DO - 10.1371/journal.pcbi.1003749 ID - Chauvot de Beauchene2014 ER - TY - JOUR AU - Lemmon, M. A. AU - Schlessinger, J. PY - 2010 DA - 2010// TI - Cell signaling by receptor-tyrosine kinases JO - Cell VL - 141 UR - https://doi.org/10.1016/j.cell.2010.06.011 DO - 10.1016/j.cell.2010.06.011 ID - Lemmon2010 ER - TY - JOUR AU - Edling, C. E. AU - Hallberg, B. PY - 2007 DA - 2007// TI - c-kit – a hematopoietic cell essential receptor tyrosine kinase JO - Int J Biochem Cell Biol VL - 39 UR - https://doi.org/10.1016/j.biocel.2006.12.005 DO - 10.1016/j.biocel.2006.12.005 ID - Edling2007 ER - TY - JOUR AU - Qiu, F. H. AU - Ray, P. AU - Brown, K. AU - Barker, P. E. AU - Jhanwar, S. AU - Ruddle, F. H. PY - 1988 DA - 1988// TI - Primary structure of c-kit: relationship with the csf-1/pdgf receptor kinase family–oncogenic activation of v-kit involves deletion of extracellular domain and c terminus JO - EMBO J VL - 7 ID - Qiu1988 ER - TY - JOUR AU - Orfao, A. AU - Garcia-Montero, A. AU - Sanchez, L. AU - Escribano, L. PY - 2007 DA - 2007// TI - Recent advances in the understanding of mastocytosis: the role of kit mutations* JO - Br J Haematol VL - 138 UR - https://doi.org/10.1111/j.1365-2141.2007.06619.x DO - 10.1111/j.1365-2141.2007.06619.x ID - Orfao2007 ER - TY - JOUR AU - Majidi, M. AU - Lasota, J. PY - 2002 DA - 2002// TI - Pathology and diagnostic criteria of gastrointestinal stromal tumors (gists): a review JO - Eur J Cancer VL - Suppl 5 ID - Majidi2002 ER - TY - JOUR AU - Gajiwala, K. S. AU - Wu, J. C. AU - Christensen, J. AU - Deshmukh, G. D. AU - Diehl, W. AU - DiNitto, J. P. PY - 2009 DA - 2009// TI - KIT kinase mutants show unique mechanisms of drug resistance to imatinib and sunitinib in gastrointestinal stromal tumor patients JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0812413106 DO - 10.1073/pnas.0812413106 ID - Gajiwala2009 ER - TY - JOUR AU - Foda, Z. H. AU - Shan, Y. AU - Kim, E. T. AU - Shaw, D. E. AU - Seeliger, M. A. PY - 2015 DA - 2015// TI - A dynamically coupled allosteric network underlies binding cooperativity in Src kinase JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms6939 DO - 10.1038/ncomms6939 ID - Foda2015 ER - TY - JOUR AU - Jr, R. R. PY - 2005 DA - 2005// TI - Structure and regulation of kit protein-tyrosine kinase – the stem cell factor receptor JO - Biochem Biophys Res Commun VL - 338 UR - https://doi.org/10.1016/j.bbrc.2005.09.150 DO - 10.1016/j.bbrc.2005.09.150 ID - Jr2005 ER - TY - JOUR AU - Griffith, J. AU - Black, J. AU - Faerman, C. AU - Swenson, L. AU - Wynn, M. AU - Lu, F. AU - Lippke, J. AU - Saxena, K. PY - 2004 DA - 2004// TI - The structural basis for autoinhibition of {FLT3} by the juxtamembrane domain JO - Mol Cell VL - 13 UR - https://doi.org/10.1016/S1097-2765(03)00505-7 DO - 10.1016/S1097-2765(03)00505-7 ID - Griffith2004 ER - TY - JOUR AU - Nolen, B. AU - Taylor, S. AU - Ghosh, G. PY - 2004 DA - 2004// TI - Regulation of protein kinases: Controlling activity through activation segment conformation JO - Mol Cell VL - 15 UR - https://doi.org/10.1016/j.molcel.2004.08.024 DO - 10.1016/j.molcel.2004.08.024 ID - Nolen2004 ER - TY - JOUR AU - Huse, M. AU - Kuriyan, J. PY - 2002 DA - 2002// TI - The conformational plasticity of protein kinases JO - Cell VL - 109 UR - https://doi.org/10.1016/S0092-8674(02)00741-9 DO - 10.1016/S0092-8674(02)00741-9 ID - Huse2002 ER - TY - JOUR AU - Chen, H. AU - Ma, J. AU - Li, W. AU - Eliseenkova, A. V. AU - Xu, C. AU - Neubert, T. A. PY - 2007 DA - 2007// TI - A molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases JO - Mol Cell VL - 27 UR - https://doi.org/10.1016/j.molcel.2007.06.028 DO - 10.1016/j.molcel.2007.06.028 ID - Chen2007 ER - TY - JOUR AU - Lei, H. AU - Wu, C. AU - Wang, Z. X. AU - Zhou, Y. AU - Duan, Y. PY - 2008 DA - 2008// TI - Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations JO - J Chem Phys VL - 128 UR - https://doi.org/10.1063/1.2937135 DO - 10.1063/1.2937135 ID - Lei2008 ER - TY - JOUR AU - Sato, S. AU - Religa, T. L. AU - Fersht, A. R. PY - 2006 DA - 2006// TI - Phi-analysis of the folding of the B domain of protein A using multiple optical probes JO - J Mol Biol VL - 360 UR - https://doi.org/10.1016/j.jmb.2006.05.051 DO - 10.1016/j.jmb.2006.05.051 ID - Sato2006 ER - TY - JOUR AU - Sato, S. AU - Religa, T. L. AU - Daggett, V. AU - Fersht, A. R. PY - 2004 DA - 2004// TI - Testing protein-folding simulations by experiment: B domain of protein A JO - Proc Natl Acad Sci U S A VL - 101 UR - https://doi.org/10.1073/pnas.0401396101 DO - 10.1073/pnas.0401396101 ID - Sato2004 ER - TY - JOUR AU - Vu, D. M. AU - Myers, J. K. AU - Oas, T. G. AU - Dyer, R. B. PY - 2004 DA - 2004// TI - Probing the folding and unfolding dynamics of secondary and tertiary structures in a three-helix bundle protein JO - Biochemistry VL - 43 UR - https://doi.org/10.1021/bi036203s DO - 10.1021/bi036203s ID - Vu2004 ER - TY - JOUR AU - Bai, Y. AU - Karimi, A. AU - Dyson, H. J. AU - Wright, P. E. PY - 1997 DA - 1997// TI - Absence of a stable intermediate on the folding pathway of protein A JO - Protein Sci VL - 6 UR - https://doi.org/10.1002/pro.5560060709 DO - 10.1002/pro.5560060709 ID - Bai1997 ER - TY - JOUR AU - Li, T. AU - Kon, N. AU - Jiang, L. AU - Tan, M. AU - Ludwig, T. AU - Zhao, Y. PY - 2012 DA - 2012// TI - Tumor suppression in the absence of p53-mediated cell-cycle arrest, apoptosis, and senescence JO - Cell VL - 149 UR - https://doi.org/10.1016/j.cell.2012.04.026 DO - 10.1016/j.cell.2012.04.026 ID - Li2012 ER - TY - JOUR AU - Vousden, K. H. AU - Prives, C. PY - 2009 DA - 2009// TI - Blinded by the light: the growing complexity of p53 JO - Cell VL - 137 UR - https://doi.org/10.1016/j.cell.2009.04.037 DO - 10.1016/j.cell.2009.04.037 ID - Vousden2009 ER - TY - JOUR AU - Vogelstein, B. AU - Lane, D. AU - Levine, A. J. PY - 2000 DA - 2000// TI - Surfing the p53 network JO - Nature VL - 408 UR - https://doi.org/10.1038/35042675 DO - 10.1038/35042675 ID - Vogelstein2000 ER - TY - BOOK AU - Strachan, T. AU - R, A. PY - 1999 DA - 1999// TI - Human Molecular Genetics PB - Wiley-Liss CY - New York ID - Strachan1999 ER - TY - JOUR AU - Lu, W. J. AU - Amatruda, J. F. AU - Abrams, J. M. PY - 2009 DA - 2009// TI - p53 ancestry: gazing through an evolutionary lens JO - Nat Rev Cancer VL - 9 UR - https://doi.org/10.1038/nrc2732 DO - 10.1038/nrc2732 ID - Lu2009 ER - TY - JOUR AU - Okorokov, A. L. AU - Orlova, E. V. PY - 2009 DA - 2009// TI - Structural biology of the p53 tumour suppressor JO - Curr Opin Struct Biol VL - 19 UR - https://doi.org/10.1016/j.sbi.2009.02.003 DO - 10.1016/j.sbi.2009.02.003 ID - Okorokov2009 ER - TY - JOUR AU - Canadillas, J. M. AU - Tidow, H. AU - Freund, S. M. AU - Rutherford, T. J. AU - Ang, H. C. AU - Fersht, A. R. PY - 2006 DA - 2006// TI - Solution structure of p53 core domain: structural basis for its instability JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0510941103 DO - 10.1073/pnas.0510941103 ID - Canadillas2006 ER - TY - JOUR AU - Bullock, A. N. AU - Henckel, J. AU - DeDecker, B. S. AU - Johnson, C. M. AU - Nikolova, P. V. AU - Proctor, M. R. PY - 1997 DA - 1997// TI - Thermodynamic stability of wild-type and mutant p53 core domain JO - Proc Natl Acad Sci U S A VL - 94 UR - https://doi.org/10.1073/pnas.94.26.14338 DO - 10.1073/pnas.94.26.14338 ID - Bullock1997 ER - TY - JOUR AU - Lukman, S. AU - Lane, D. P. AU - Verma, C. S. PY - 2013 DA - 2013// TI - Mapping the structural and dynamical features of multiple p53 DNA binding domains: insights into loop 1 intrinsic dynamics JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0080221 DO - 10.1371/journal.pone.0080221 ID - Lukman2013 ER - TY - JOUR AU - McGibbon, R. T. AU - Beauchamp, K. A. AU - Harrigan, M. P. AU - Klein, C. AU - Swails, J. M. AU - Hernández, C. X. PY - 2015 DA - 2015// TI - Pande VS. MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories JO - Biophys J VL - 109 UR - https://doi.org/10.1016/j.bpj.2015.08.015 DO - 10.1016/j.bpj.2015.08.015 ID - McGibbon2015 ER - TY - JOUR AU - de Beer, T. A. AU - Berka, K. AU - Thornton, J. M. AU - Laskowski, R. A. PY - 2014 DA - 2014// TI - PDBsum additions JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt940 DO - 10.1093/nar/gkt940 ID - de Beer2014 ER -