Table 4 Validating gapless alignments: each column contains the number of predicted gapped alignments by each aligner. The number of mis-alignments is given in the last lines
From: Aligning the unalignable: bacteriophage whole genome alignments
Region’s start and end positions | Alpha | Clustal O | T-Coffee | Muscle | Gapless | Method |
|---|---|---|---|---|---|---|
1. U2[1869-2931] | 0 | 0 | 0 | 2 | Yes | tblastx |
2. U2[6932-7965] | 0 | 0 | 0 | 2 | Yes | tblastx |
3. U2[10982-11518] | 0 | 0 | 2 | 2 | Yes | tblastx |
4. U2[11521-12378] | 0 | 0 | 0 | 2 | Yes | tblastx |
5. U2[17171-18327] | 0 | 1 | 1 | 1 | Yes | switch |
6. U2[76-263] | 0 | 0 | 1 | 1 | ? | tie |
7. 85[23847-24292] | 0 | 0 | 0 | 1 | Yes | majority |
8. 85[35337-35536] | 0 | 0 | 1 | 1 | Yes | tblastx |
Error(s) if Alpha is right for Region 6 | 0 | 1 | 5 | 12 | ||
Error(s) if Alpha is wrong for Region 6 | 1 | 2 | 4 | 11 |