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Table 2 Means of the metric values and of their ranks among the different methods over the 14 studied datasets separated into method for the following metrics: sepscore, avedist, klmetr and pvca

From: Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

sepscore
Mean values combat fabatch stand sva meanc ratiog ratioa none
  0.09895 0.10227 0.13238 0.15217 0.15807 0.16618 0.18314 0.2806
Mean ranks combat fabatch stand sva meanc ratiog ratioa none
  2.28571 3.35714 3.71429 4.42857 4.64286 4.78571 5.92857 6.85714
avedist
Mean values meanc ratiog ratioa combat stand fabatch sva none
  233.32619 235.27321 235.39525 235.52757 237.86855 239.53197 240.55365 243.10948
Mean ranks meanc combat ratiog ratioa fabatch stand none sva
  3.07143 3.57143 3.57143 3.57143 5.14286 5.21429 5.78571 6.07143
klmetr
Mean values fabatch combat stand sva meanc ratioa ratiog none
  0.32312 0.33748 0.35524 1.08835 1.13029 1.15025 1.23577 2.85956
Mean ranks combat fabatch stand sva meanc ratioa ratiog none
  2.85714 3 3.14286 4.57143 4.71429 4.92857 5.42857 7.35714
pvca
Mean values sva combat meanc ratioa ratiog stand fabatch none
  0.06364 0.06015 0.05636 0.0502 0.04933 0.04741 0.04569 0.04477
Mean ranks sva combat meanc ratioa stand ratiog fabatch none
  2.92857 3.14286 3.57143 5 5.07143 5.21429 5.35714 5.71429
  1. In each row the results are listed in descending order according to mean performance in terms of the original values and their ranks, respectively. The results of FAbatch are printed in bold