BMC Bioinformatics

Table 3 Means of the metric values and of their ranks among the different methods over the 14 studied datasets separated into method for the following metrics: diffexpr, skewdiv and corbeaf

From: Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

diffexpr
Mean values	combat	stand	ratioa	meanc	ratiog	none	sva	fabatch
	0.11044	0.10958	0.10891	0.1088	0.10796	0.10526	0.09517	0.09364
Mean ranks	combat	stand	ratioa	meanc	none	ratiog	fabatch	sva
	3.28571	3.57143	3.78571	4.14286	4.5	4.64286	5.85714	6.21429
skewdiv
Mean values	fabatch	sva	stand	combat	ratioa	ratiog	meanc	none
	0.01724	0.02206	0.02377	0.02688	0.02875	0.03257	0.03671	0.05041
Mean ranks	sva	fabatch	combat	stand	meanc	ratioa	ratiog	none
	2.21429	2.92857	4.28571	4.78571	5.07143	5.42857	5.5	5.78571
corbeaf
Mean values	none	combat	meanc	ratioa	ratiog	stand	sva	fabatch
	1	0.86857	0.86742	0.85516	0.84931	0.82754	0.69313	0.67795
Mean ranks	none	combat	meanc	ratiog	ratioa	stand	sva	fabatch
	1	2.92857	2.92857	4.21429	4.35714	5.85714	7.14286	7.57143

In each row the results are listed in descending order according to mean performance in terms of the original values and their ranks, respectively. The results of FAbatch are printed in bold

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ISSN: 1471-2105

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