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Table 3 The running time of MEGAN, SOrt-ITEMS, and SeMeta on dataset d s2

From: A novel semi-supervised algorithm for the taxonomic assignment of metagenomic reads

Methods

Clustering

Similarity search

Assignment

Total

 
 

runtime (hour)

runtime (hour)

runtime (hour)

(hour)

 

MEGAN

N/A

1052

0.57

1052.57

 

SOrt-ITEMS

N/A

1052

9

1061

 

SeMeta

0.62

187

0.05

187.67

 
  1. N/A = Not Available