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Fig. 8 | BMC Bioinformatics

Fig. 8

From: MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvature

Fig. 8

Alignment of 1THL with 1TMN exhibits multiple partial alignments. In all figures 1TMN is fixed (blue) and 1THL (pink) is transformed. (Top Left and Center): The two mirrored alignments of the aromatic rings in 1THL and 1TMN are detected as the best two alignments. (Top Right and Bottom Left): The two mirrored alignments of the benzyl ring of 1THL with the hetero-cycle of tryptophan in 1TMN are detected third and fourth best alignments. (Bottom Center): A variant of the the alignment of the aromatic ring in 1THL with the other parts of the penta-cycle of tryptophan in 1TMN. (Bottom Right): Alignment of the tryptophan parts of both ligands

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