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Table 3 Phylogenetic reconstruction of mitochondrial chromosome structures in sporozoan class Aconoidasida

From: Algorithms for reconstruction of chromosomal structures

Tree node Chromosome structure
Plasmodium fragile – Babesia bovis ss1 cox1 *cox3 ls1 *ls3 *ss3 *ls6 ls8 ss5 (C) | *ls7 *ss6 *ss4 ls9 ss2 ls4 ls5 cytb ls2 (L)
Theileria annulata – Babesia bovis *ls4 ls5 cytb ls2 ls3 *ls1 cox3 *cox1 (L)
Theileria annulata – Theileria parva *ls4 ls5 cytb ls2 ls3 *ls1 cox3 *cox1 (L)
Theileria annulata (l) cox1 *cox3 ls1 *ls3 *cytb *ls5 ls4 (L)
Theileria parva (l) cox1 *cox3 ls1 *ls3 *ls2 *cytb *ls5 ls4 (L)
Babesia bovis (l) cox1 *cox3 ls1 *ls2 *ls3 *cytb *ls4 ls5 (L)
Plasmodium fragile – Plasmodium berghei *ls7 *ss6 *ss4 *ls1 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium juxtanucleare – Plasmodium berghei ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium juxtanucleare – Leucocytozoon sabrazesi ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium juxtanucleare – Plasmodium gallinaceum ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium juxtanucleare (l) ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium gallinaceum (l) ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Leucocytozoon sabrazesi (l) ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium berghei (l) ls1 ss4 ss6 ls7 ls6 ss3 ls3 ls9 ss2 ls4 ls5 *cox3 ls8 ss5 ss1 cox1 cytb ls2 (L)
Plasmodium fragile – Plasmodium relictum ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium reichenowi – Plasmodium relictum ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium floridense – Plasmodium relictum ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium floridense (l) ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium relictum (l) ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (C)
Plasmodium reichenowi – Plasmodium mexicanum ss3 ls3 ls9 ss2 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium reichenowi – Plasmodium falciparum ss3 ls3 ls9 ss2 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium reichenowi (l) ss3 ls3 ls9 ss2 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium falciparum (l) ss3 ls3 ls9 ss2 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium mexicanum (l) ss3 ls3 ls9 ss2 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss4 ss6 ls7 (L)
Plasmodium fragile – Plasmodium simium ss1 cox1 cytb ls1 ss4 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 (C)
Plasmodium fragile – Leucocytozoon fringillinarum ss1 cox1 cytb ls1 ss4 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 (C)
Plasmodium fragile – Plasmodium vivax ss1 cox1 cytb ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 (C)
Plasmodium fragile – Plasmodium knowlesi ss1 cox1 cytb ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 (C)
Plasmodium fragile – Leucocytozoon majoris ss1 cox1 cytb ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 (C)
Plasmodium fragile (l) ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb (C)
Leucocytozoon majoris (l) ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss6 ls7 (C)
Plasmodium knowlesi (l) ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb (C)
Plasmodium vivax (l) ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb (C)
Leucocytozoon fringillinarum (l) ss3 ls3 ls9 ss2 ls4 *cox3 ls8 ss5 ss1 cox1 cytb ls1 ss6 ls7 ss4 (C)
Plasmodium simium (l) ls1 ss6 ls7 ss3 ls3 ls9 ss2 ls4 *cox3 cox1 cytb ls8 ss5 ss1 (C)
  1. Reconstruction was generated by the descent algorithm for the tree in Fig. 4. Circular and linear chromosomes are marked by C and L, respectively. The left column shows a non-leaf tree node by the first and the last leaves. The right column shows the chromosome structure in the node (the order of rows corresponds to the traversal of the tree in Fig. 4). The leaves are labelled by (l), only their chromosomal structures are feeded to the input of our algorithm