Pipeline | Min required read length (bp)a | Max usable read length (bp)b | Total number of usable R1 readsc | Total usable bases (Gb)d | Time (hrs:mins)e |
---|---|---|---|---|---|
Reference-based | |||||
GBS-SNP-CROP-RG | 32 | NA | 128,577,030 | 16.82 | 8:30 |
TASSEL-GBS-mxTagL32 | 50 | 32 | 120,593,880 | 3.85 | 0:35 |
TASSEL-GBS-mxTagL64 | 75 | 64 | 105,908,174 | 6.77 | 1:10 |
Reference-independent | |||||
GBS-SNP-CROP-MR01 | 32 | NA | 128,577,030 | 16.82 | 11:03 |
TASSEL-UNEAK | 32 | 64 | 134,352,640 | 8.60 | 0:27 |