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Table 1  Number of PTES transcripts identified from Human Fibroblast samples using four methods

From: PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events

Method

 

SRR444974

SRR445016

SRR444975

SRR444655

Memczaka

Identified

22663 (17752)

22351 (17231)

3733 (2956)

1667 (873)

 

Run Time

1993 m

2479 m

2602 m

2061 m

MapSplicea

Identified

9701 (7087)

7380 (4891)

2231 (986)

1479 (307)

 

Run Time

6167 m

16356 m

7412 m

2605 m

PTESFinder

Identified

25116

24489

5383

2316

 

Run Time

1355 m

1963 m

1530 m

1369 m

circRNA_findera

Identified

49901 (32856)

54154 (32186)

11069 (7309)

3130 (2131)

 

Run Time

75 m

90 m

80 m

88 m

  1. acircRNAs utilizing two RefSeq annotated splice sites in brackets