Table 2 The weight of associations between 10 molecules and protein PA1535 based on their co-occurrences in the abstract of Förster et al. [41]
From: Predicting the functions of a protein from its ability to associate with other molecules
Molecule | n mi, p | A mi, p | f mi, p | f Ami, p | T Aj (m i , p) | T' Aj (m i , p) | w Förster (m i , p) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
related | unrelated | related | unrelated | related | unrelated | related | unrelated | ||||
AtuD | 4 | 3 | 11 | 9 | 1.6 | 1.5 | 0.24 | 0.18 | 0.069 | 0.049 | 0.020 |
citronellyl-CoA | 2 | 2 | 12 | 8 | 1.3 | 1.3 | 0.22 | 0.19 | 0.116 | 0.099 | 0.017 |
octanoyl-CoA | 2 | 1 | 10 | 9 | 1.3 | 1 | 0.25 | 0.23 | 0.115 | 0.103 | 0.012 |
terpenoid-CoA | 1 | 1 | 10 | 8 | 1 | 1 | 0.23 | 0.26 | 0.009 | 0.001 | 0.008 |
isovaleryl-CoA | 1 | 2 | 2 | 6 | 1 | 1.3 | 0.12 | 0.22 | 0.005 | 0.002 | 0.003 |
Docosenoyl-CoA | 0 | 0 | 9 | 7 | 0 | 0 | 0.24 | 0.25 | 0 | 0 | 0 |
OPC4-CoA | 0 | 0 | 11 | 6 | 0 | 0 | 0.24 | 0.24 | 0 | 0 | 0 |
Sirodesmin H | 0 | 0 | 5 | 8 | 0 | 0 | 0.21 | 0.28 | 0 | 0 | 0 |
OPC8-CoA | 0 | 0 | 7 | 3 | 0 | 0 | 0.23 | 0.18 | 0 | 0 | 0 |
3-dipole | 0 | 0 | 4 | 2 | 0 | 0 | 0.22 | 0.15 | 0 | 0 | 0 |