Skip to main content

Table 4 Beats/looses scores and normalized weights of the 10 molecules that associate with protein PA1535 based on their co-occurrences in 12 abstracts, calculated based on their weights shown in Table 3

From: Predicting the functions of a protein from its ability to associate with other molecules

 

AtuD

citronellyl-CoA

octanoyl-CoA

terpenoid-CoA

isovaleryl-CoA

Docosenoyl-CoA

OPC4-CoA

Sirodesmin H

OPC8-CoA

3-dipole

AtuD

0

-

+

-

-

-

-

0

-

-

citronellyl-CoA

+

0

0

0

octanoyl-CoA

0

0

terpenoid-CoA

+

+

+

0

+

0

+

isovaleryl-CoA

+

+

+

0

Docosenoyl-CoA

+

+

+

+

+

0

0

+

-

+

OPC4-CoA

+

+

+

+

+

0

0

+

-

0

Sirodesmin H

0

0

+

0

+

-

-

0

-

0

OPC8-CoA

+

+

+

+

+

+

+

+

0

+

3-dipole

+

+

+

-

+

-

0

0

-

0

S(m i , p)

+6

+5

+8

+2

+3

−6

−5

+1

−9

−1

\( \overline{w}\left({m}_i,\kern0.1em p\right) \)

0.16

0.15

0.18

0.12

0.13

0.03

0.04

0.10

0

0.09

  1. The Symbol “+” denotes that molecule m i (column) Beats molecule m j (row) in the Abstracts, while “-” denotes that m i Lost. “0” denotes that m i and m j have the same Number of Beats and Looses. S(m i , p) and \( \overline{w}\left({m}_i,\kern0.2em p\right) \) denote the Score and Normalized Weight, respectively, of Molecule m i in The 12 Abstracts. An Entry is based on Column-Row Order