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Table 1 P-values of Wilcoxon signed-rank tests comparing the performance of tREX with each of the comparison methods for the model with parameters (β 0,β 1,γ 1,γ 2)=(3,−0.434,0.3,0.3)

From: Impact of data resolution on three-dimensional structure inference methods

  

Resolution/Percent zeros

 

Criterion

Method

0 %

10 %

20 %

30 %

60 %

(A). NRE Model

 

RMSD

tPAM

8.0×10−3

1.2×10−2

9.6×10−2

1.1×10−7

1.3×10−7

 

BACH

5.6×10−10

4.1×10−10

3.8×10−10

3.8×10−10

3.8×10−10

 

PASTIS

3.8×10−10

2.7×10−7

5.5×10−3

8.9×10−1

9.9×10−1

 

ShRec3D

3.5×10−15

3.8×10−10

3.8×10−10

3.8×10−10

3.8×10−10

 

ChromSDE

4.9×10−10

5.6×10−10

2.7×10−9

2.7×10−9

5.1×10−9

Correlation

tPAM

7.6×10−1

9.9×10−1

9.9×10−1

5.5×10−2

1.0×10−1

 

BACH

1.5×10−6

1.3×10−9

8.0×10−10

3.8×10−10

3.8×10−10

 

PASTIS

9.0×10−10

4.5×10−1

9.9×10−1

9.9×10−1

9.9×10−1

 

ShRec3D

3.5×10−15

3.8×10−10

1.0×10−9

7.1×10−10

1.7×10−9

 

ChromSDE

3.6×10−7

1.3×10−3

6.2×10−1

1.9×10−1

5.7×10−2

(B). ST Model

 

RMSD

tPAM

4.9×10−9

1.9×10−9

1.2×10−9

2.2×10−8

3.6×10−9

 

BACH

8.5×10−10

1.5×10−8

2.9×10−9

2.1×10−9

7.2×10−9

 

PASTIS

6.3×10−10

1.0×10−5

3.1×10−7

2.3×10−4

6.3×10−4

 

ShRec3D

4.3×10−7

1.5×10−6

9.3×10−7

8.4×10−7

9.6×10−9

 

ChromSDE

1.2×10−8

2.0×10−8

1.2×10−8

1.2×10−8

4.6×10−8

Correlation

tPAM

3.8×10−10

3.8×10−10

4.1×10−10

3.8×10−10

1.2×10−9

 

BACH

3.8×10−10

3.8×10−10

3.8×10−10

3.8×10−10

4.1×10−10

 

PASTIS

3.8×10−10

1.5×10−8

4.9×10−6

1.5×10−4

1.5×10−5

 

ShRec3D

1.0×10−9

3.1×10−10

5.3×10−9

3.6×10−8

8.6×10−10

 

ChromSDE

4.1×10−10

3.8×10−10

4.1×10−10

4.3×10−10

3.2×10−9

  1. The results for the NRE model are given in the top segment (A) and those for the ST model are given in the bottom segment (B)