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Fig. 2 | BMC Bioinformatics

Fig. 2

From: The role of structural parameters in DNA cyclization

Fig. 2

Evaluating seven sets of curated structural parameters for accurately estimating experimental J factors. Each of the three panels contains seven different curves with colors corresponding to the respective set of structural parameters. The y-axes reflect the orders of magnitude difference between experimentally measured and computationally derived J factors. The x-axes correspond to the percentage of sequences for a given order of magnitude difference. (a) Curves based on all examined DNA sequences; (b) Curves based on DNA sequences with lengths longer than 100 bp; (c) Curves based on DNA sequences with lengths shorter than or equal to 100 bp

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