Fig. 2
From: NEAT: a framework for building fully automated NGS pipelines and analyses
The Target.txt file. NEAT is centralized around a single text file (Targets.txt) containing all required information including sample names, inputs, their relationships, virtual paths to reference genomes, parameters, alignment and peak calling algorithms. Many of the settings are either automatically filled in when a new project is created or need to be filled in only once. The color code helps understand which parameters are specific to the cluster (green); the user (orange); the experiment (red and blue) or different parameters (grey)