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Table 1 New gene-protein-reaction (GPR) associations added in the E. coli model augmented with underground metabolic reactions, according to the experimental studies in [10]

From: Multiplex methods provide effective integration of multi-omic data in genome-scale models

Reaction name GPR in iJO1366 GPR in this study
Aspartate transaminase aspC aspC OR tyrB
Tyrosine transaminase aspC OR tyrB aspC OR tyrB OR ilvE
Acetylornithine transaminase argD OR astC argD OR astC OR gabT OR puuE
Succinyldiaminopimelate transaminase argD argD OR astC OR gabT OR puuE
Citrate synthase gltA gltA OR prpC