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Table 1 New gene-protein-reaction (GPR) associations added in the E. coli model augmented with underground metabolic reactions, according to the experimental studies in [10]

From: Multiplex methods provide effective integration of multi-omic data in genome-scale models

Reaction name

GPR in iJO1366

GPR in this study

Aspartate transaminase


aspC OR tyrB

Tyrosine transaminase

aspC OR tyrB

aspC OR tyrB OR ilvE

Acetylornithine transaminase

argD OR astC

argD OR astC OR gabT OR puuE

Succinyldiaminopimelate transaminase


argD OR astC OR gabT OR puuE

Citrate synthase


gltA OR prpC