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Table 4 The Ramchandran plot analysis of the proteins before and after MD simulation obtained by RAMPAGE Ramachandran Plot Assessment

From: Design, structure prediction and molecular dynamics simulation of a fusion construct containing malaria pre-erythrocytic vaccine candidate, PfCelTOS, and human interleukin 2 as adjuvant

Proteins   Favored region Allowed region Outlier region
PfCelTOS Pre-MD 57.3 % 26.3 % 16.4 %
  Post-MD 74.7 % 19.4 % 5.9 %
IL-2-(GGGGS)3-PfCelTOS Pre-MD 58.3 % 22.9 % 18.8 %
  Post-MD 76.4 % 17.6 % 6.0 %
Co1-(AEEEK)3-IL-2-(GGGGS)3-PfCelTOS Pre-MD 76.3 % 15.9 % 7.8 %
  Post-MD 85.8 % 11.6 % 2.6 %