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Table 4 The Ramchandran plot analysis of the proteins before and after MD simulation obtained by RAMPAGE Ramachandran Plot Assessment

From: Design, structure prediction and molecular dynamics simulation of a fusion construct containing malaria pre-erythrocytic vaccine candidate, PfCelTOS, and human interleukin 2 as adjuvant

Proteins

 

Favored region

Allowed region

Outlier region

PfCelTOS

Pre-MD

57.3 %

26.3 %

16.4 %

 

Post-MD

74.7 %

19.4 %

5.9 %

IL-2-(GGGGS)3-PfCelTOS

Pre-MD

58.3 %

22.9 %

18.8 %

 

Post-MD

76.4 %

17.6 %

6.0 %

Co1-(AEEEK)3-IL-2-(GGGGS)3-PfCelTOS

Pre-MD

76.3 %

15.9 %

7.8 %

 

Post-MD

85.8 %

11.6 %

2.6 %