Fig. 6

Cellness metric example. a Slice through the original confocal microscopy image. b Propagation of confidence from segments marked as correct (indicated by arrows) to similar neighbors. c Color coded cellness metric. d Reconstructed cross section in the x−z plane of the cell with low cellness metric indicated by arrow in panel. This segment appears correct in the view from panel C however it has a low cellness score. e Error in the segmentation, indicated by arrow, observable in the cross section (the segment leaks into the cell below). The cellness metric helped identify this error in segmentation