Table 3 Number of differentially expressed gene sets identified by eight GSA methods for the p53 dataset
From: Gene set analysis using sufficient dimension reduction
P −value | SDR T | SDR V | GSEA | GT | MVAT | PCOT | GSNCA | GSCA |
|---|---|---|---|---|---|---|---|---|
≤0.001 | 10 | 40 | 12 | 15 | 44 | 8 | 5 | 2 |
≤0.01 | 45 | 107 | 100 | 64 | 186 | 36 | 28 | 18 |
≤0.05 | 199 | 329 | 413 | 226 | 627 | 143 | 159 | 100 |