Skip to main content

Table 3 Comparison of processing (compression) times of six software suites. Times are recorded row by row denoting real, user, and system time in order

From: MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression

Data Time MCH MCG MCEG bzip2 gzip MFComp
ERR321482 real 299 m 20 s 294 m 27 s 274 m 43 s 2 m 2 s 3 m 49 s 2 m 38 s
  user 422 m 21 s 422 m 49 s 402 m 25 s 1 m 56 s 3 m 45 s 4 m 49 s
  sys 12 m 24 s 8 m 48 s 12 m 13 s 0 m 1 s 0 m 1 s 0 m 13 s
SRR359032 real 127 m 34 s 129 m 32 s 128 m 14 s 5 m 36 s 10 m 39 s 8 m 2 s
  user 245 m 53 s 247 m 43 s 253 m 16 s 5 m 19 s 10 m 30 s 13 m 3 s
  sys 8 m 37 s 10 m 1 s 15 m 25 s 0 m 2 s 0 m 2 s 0 m 15 s
ERR532393 real 639 m 55 s 635 m 53 s 641 m 32 s 11 m 28 s 22 m 18 s 17 m 2 s
  user 1061 m 50 s 1069 m 9 s 1090 m 20 s 11 m 4 s 21 m 58 s 28 m 29 s
  sys 73 m 59 s 27 m 59 s 43 m 35 s 0 m 5 s 0 m 5 s 0 m 21 s
SRR1450398 real 440 m 4 s 439 m 42 s 440 m 36 s 7 m 38 s 14 m 39 s 10 m 32 s
  user 66 m 56 s 865 m 38 s 865 m 6 s 7 m 19 s 14 m 24 s 18 m 8 s
  sys 821 m 2 s 23 m 51 s 26 m 5 s 0 m 3 s 0 m 3 s 0 m 18 s
SRR062462 real 217 m 21 s 224 m 32 s 215 m 58 s 2 m 48 s 2 m 6 s 6 m 38 s
  user 254 m 26 s 261 m 19 s 256 m 17 s 2 m 7 s 1 m 18 s 10 m 39 s
  sys 15 m 45 s 16 m 48 s 20 m 14 s 0 m 3 s 0 m 3 s 0 m 16 s