Skip to main content

Table 1 Datasets used in study

From: Intra- and interspecies gene expression models for predicting drug response in canine osteosarcoma

Datasets

# of samples

Sample type

Tumor types represented

Microarray platform/public ID

NCI60

60

Human cancer cell lines

Breast, melanoma, central nervous system, colon, lung, leukemia, ovarian, prostate, renal

GeneChip Human Genoma U133A array (GSE5846)

GDSCosteo

10

Human osteosarcoma cell lines (subset of GDSC panel)

Osteosarcoma

GeneChip HT Human Genome U133A array (E-MTAB-783, ArrayExpress)

FACC

29

Canine cancer cell lines

Hemangiosarcoma, histiocytosis, leukemia, lymphoma, mammary tumor, mast cell, melanoma, osteosarcoma, soft tissue sarcoma, transitional cell carcinoma

GeneChip Canine Genome 2.0 array (GSE76126)

FACCosteo

10

Canine osteosarcoma cell lines (subset of FACC panel)

Osteosarcoma

GeneChip Canine Genome 2.0 array (GSE76126)

COS16

16

Canine osteosarcoma tumor samples

Osteosarcoma

GeneChip Canine Genome 2.0 array (GSE24251)

COS33

33

Canine osteosarcoma tumor samples

Osteosarcoma

GeneChip Canine Genome 2.0 array (GSE76127)