Table 1 Mapping statistics of bisulfite amplicon libraries
Sample | Mapping Efficiency | Unique Hits | Methylated CpG | Methylated CHG | Methylated CHH | Total C’s analysed |
|---|---|---|---|---|---|---|
293 | 52.2 % | 7539 | 64.9 % | 0.2 % | 0.3 % | 316211 |
40424 | 55.3 % | 9414 | 37.5 % | 0.2 % | 0.2 % | 351086 |
910046 | 42.0 % | 7060 | 32.6 % | 0.2 % | 0.3 % | 299795 |
12a-cd19 | 14.9 % | 48648 | 47.9 % | 0.4 % | 0.5 % | 1933767 |
12a-cd34 | 30.3 % | 85049 | 36.5 % | 0.1 % | 0.2 % | 3703147 |
12a-cd45 | 32.4 % | 109173 | 32.6 % | 0.1 % | 0.2 % | 4714744 |
12acd33 | 36.2 % | 161885 | 32.8 % | 0.2 % | 0.2 % | 6997070 |
6-mda453 | 54.6 % | 201660 | 84.4 % | 0.8 % | 1.3 % | 9179816 |
6c-cd19 | 7.9 % | 22258 | 77.8 % | 0.2 % | 0.3 % | 777739 |
6c-cd33 | 27.9 % | 20071 | 35.2 % | 0.2 % | 0.2 % | 851116 |
6c-cd34 | 19.5 % | 36928 | 49.7 % | 0.2 % | 0.2 % | 1628107 |
6ccd45 | 33.0 % | 31087 | 39.5 % | 0.1 % | 0.2 % | 1314281 |
9a-cd19 | 21.2 % | 39352 | 48.7 % | 0.2 % | 0.3 % | 1638757 |
9a-cd33 | 31.9 % | 125884 | 35.8 % | 0.2 % | 0.2 % | 5459419 |
9a-cd34 | 26.2 % | 77870 | 43.4 % | 0.2 % | 0.2 % | 3321993 |
9a-cd45 | 46.6 % | 28085 | 29.8 % | 0.2 % | 0.2 % | 1211803 |
9awholeblood | 31.5 % | 97532 | 30.8 % | 0.2 % | 0.2 % | 4081834 |
brl | 49.3 % | 9107 | 32.7 % | 0.2 % | 0.4 % | 398977 |
caco | 19.6 % | 129536 | 78.1 % | 0.2 % | 0.2 % | 4512574 |
dg75 | 51.7 % | 10827 | 57.2 % | 0.3 % | 0.3 % | 489096 |
ekvx | 23.0 % | 115915 | 63.1 % | 0.2 % | 0.2 % | 4494359 |
hela | 43.1 % | 41650 | 55.9 % | 0.2 % | 0.2 % | 1731811 |
hepg2 | 39.2 % | 24667 | 63.4 % | 0.3 % | 0.3 % | 971693 |
ht1080 | 40.7 % | 4586 | 67.0 % | 0.2 % | 0.4 % | 176188 |
htb22-col | 30.9 % | 45576 | 79.9 % | 0.2 % | 0.2 % | 1863098 |
jwl | 31.3 % | 18814 | 42.7 % | 0.2 % | 0.2 % | 771188 |
k562 | 49.7 % | 144791 | 55.9 % | 0.3 % | 0.3 % | 6230391 |
ls174t | 41.2 % | 3691 | 57.2 % | 0.2 % | 0.3 % | 151722 |
mcf7 | 30.0 % | 87404 | 71.6 % | 0.8 % | 0.8 % | 3786412 |
mda-mb231-bag | 29.0 % | 94811 | 77.3 % | 1.0 % | 1.1 % | 4171147 |
nalm6 | 43.6 % | 37669 | 85.8 % | 0.2 % | 0.2 % | 1569041 |
nccit | 44.0 % | 31656 | 45.7 % | 0.4 % | 0.3 % | 1406165 |
ovcar8 | 32.3 % | 46864 | 63.4 % | 0.3 % | 0.3 % | 1917527 |
sknas | 21.6 % | 275040 | 27.7 % | 0.1 % | 0.2 % | 11313285 |
u231 | 14.0 % | 123302 | 74.8 % | 0.4 % | 0.2 % | 4389352 |