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Fig. 10 | BMC Bioinformatics

Fig. 10

From: isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation

Fig. 10

Analysis of isomiR-SEA, miRanalyzer, miRExpress and miRDeep2 mapping results for hsa-miR-1244. In Figure are reported on the left side the tags and their relative occurrence (right side) assigned by isomiR-SEA, miRanalyzer, miRExpress and miRDeep2 to miR-1244 in five different samples (T27N, T04N, B05N, K07N and B20N). The d character accounts for the detection of the tag, the u for its undetection and finally the f (only for isomiR-SEA output) for its filtering. The underlined characters identify mismatches in the tag with respect to miRNA sequence. Tags with green background possess a complete seed sequence, whereas those with a red background an incomplete or corrupted seed

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BMC Bioinformatics

ISSN: 1471-2105

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