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Fig. 2 | BMC Bioinformatics

Fig. 2

From: CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction

Fig. 2

CyTRANSFINDER software architecture. CyTRANSFINDER processes three inputs: (1) the source list of genes (SRL), (2) the destination list of genes (DGL), and (3) the STP pattern (STPP) to be reconstructed. Its fusion engine connects to several on-line repositories to collect regulatory information used to infer STPs connecting source and destination genes according to the selected STP pattern. The identified STPs are then purged to remove duplicated nodes and arcs and the result is returned to the user as a Cytoscape network or exported in the form of a tab separated text file

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