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Table 4 List of a selection (101) of the Double Indirect miRNA STPPs obtained with CyTRANSFINDER using the host gene of miR-214, DNM3, as the source gene, a signature of 73 genes published in [33] as destination genes, and involving TFAP2C and CREB1 transcription factors

From: CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction

SmiRNA References TF TF target (Gene) ImiRNA References DG
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p   LRP6
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p [56, 57] MET
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p   NCAM1
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p [5759] ARHGAP12
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p   HBEGF
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p   EGFR
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p [56] MITF
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-27B-3p [60] CDH11
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B   MITF
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B [61, 62] PAK2
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B [56, 62, 63] PTEN
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B   BMPR1B
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B   JAM3
hsa-mir-214 [33] TFAP2C C9ORF3 HSA-MIR-23B [56, 62] MET
hsa-mir-214 [33] TFAP2C BCAR3 HSA-MIR-760   MMP2
hsa-mir-214 [33] TFAP2C BCAR3 HSA-MIR-760   ITGA3
hsa-mir-214 [33] TFAP2C BCAR3 HSA-MIR-760   ENG
hsa-mir-214 [33] TFAP2C CALCR HSA-MIR-489   HBEGF
hsa-mir-214 [33] TFAP2C CALCR HSA-MIR-489   TIMP2
hsa-mir-214 [33] TFAP2C PTPRN2 HSA-MIR-595   TGFBI
hsa-mir-214 [33] TFAP2C PTPRN2 HSA-MIR-595   CDH11
hsa-mir-214 [33] TFAP2C KIAA1217 HSA-MIR-603   TIMP3
hsa-mir-214 [33] TFAP2C KIAA1217 HSA-MIR-603   BMPR1B
hsa-mir-214 [33] TFAP2C KIAA1217 HSA-MIR-603   ITGB3
hsa-mir-214 [33] TFAP2C PRKCA HSA-MIR-634   BCAM
hsa-mir-214 [33] TFAP2C PRKCA HSA-MIR-634   JAG1
hsa-mir-214 [33] TFAP2C PDE4D HSA-MIR-582   LRP6
hsa-mir-214 [33] TFAP2C PDE4D HSA-MIR-582   MITF
hsa-mir-214 [33] TFAP2C PDE4D HSA-MIR-582   BMPR1B
hsa-mir-214 [33] TFAP2C PDE4D HSA-MIR-582   JAM3
hsa-mir-214 [33] TFAP2C PDE4D HSA-MIR-582   ADAM9
hsa-mir-214 [33] TFAP2C LPP HSA-MIR-28   BCAM
hsa-mir-214 [33] TFAP2C GIPR HSA-MIR-642A   CDH2
hsa-mir-214 [33] TFAP2C GIPR HSA-MIR-642B   PTEN
hsa-mir-214 [33] TFAP2C GIPR HSA-MIR-642B   PAK2
hsa-mir-214 [33] TFAP2C TENM4 HSA-MIR-708   BCAM
hsa-mir-214 [33] TFAP2C AKT2 HSA-MIR-641   TIMP3
hsa-mir-214 [33] TFAP2C AKT2 HSA-MIR-641   TFAP2A
hsa-mir-214 [33] TFAP2C AKT2 HSA-MIR-641   LRP6
hsa-mir-214 [33] TFAP2C AKT2 HSA-MIR-641   SEMA3A
hsa-mir-214 [33] TFAP2C DAPK3 HSA-MIR-637   FLT1
hsa-mir-214 [33] TFAP2C DAPK3 HSA-MIR-637   CLU
hsa-mir-214 [33] TFAP2C ZRANB2 HSA-MIR-186   ITGA6
hsa-mir-214   CREB1 ZRANB2 HSA-MIR-186-5p [59] TFAP2A
hsa-mir-214   CREB1 ZRANB2 HSA-MIR-186   JAG1
hsa-mir-214   CREB1 ZRANB2 HSA-MIR-186   MITF
hsa-mir-214   CREB1 SUPT3H HSA-MIR-586   FLT1
hsa-mir-214   CREB1 SUPT3H HSA-MIR-586   EREG
hsa-mir-214   CREB1 SUPT3H HSA-MIR-586   EGFR
hsa-mir-214   CREB1 SUPT3H HSA-MIR-586   SEMA3A
hsa-mir-214   CREB1 KIF18A HSA-MIR-610   TIMP3
hsa-mir-214   CREB1 KIF18A HSA-MIR-610   LRP6
hsa-mir-214   CREB1 UGT8 HSA-MIR-577   CD44
hsa-mir-214   CREB1 UGT8 HSA-MIR-577   TFAP2A
hsa-mir-214   CREB1 UGT8 HSA-MIR-577   PTEN
hsa-mir-214   CREB1 TUFT1 HSA-MIR-554   PODXL
hsa-mir-214   CREB1 SREBF2 HSA-MIR-33A   CDH11
hsa-mir-214   CREB1 SREBF2 HSA-MIR-33A   MITF
hsa-mir-214   CREB1 SREBF2 HSA-MIR-33A   CX3CL1
hsa-mir-214   CREB1 PANK1 HSA-MIR-107   CX3CL1
hsa-mir-214   CREB1 PANK1 HSA-MIR-107   LRP6
hsa-mir-214   CREB1 NRD1 HSA-MIR-761   TFAP2C
hsa-mir-214   CREB1 NRD1 HSA-MIR-761   PVRL2
hsa-mir-214   CREB1 NRD1 HSA-MIR-761   MITF
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   LRP6
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   CEACAM1
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   ITGA6
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   PTEN
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   ADAM9
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   SEMA3A
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   ITGB3
hsa-mir-214   CREB1 NFYC HSA-MIR-30E   NCAM1
hsa-mir-214   CREB1 NFYC HSA-MIR-30E-3p [60] TIMP3
hsa-mir-214   CREB1 MRE11A HSA-MIR-548L   PVRL2
hsa-mir-214   CREB1 MRE11A HSA-MIR-548L   PAK2
hsa-mir-214   CREB1 SND1 HSA-MIR-593   ERBB2
hsa-mir-214   CREB1 TMEM245 HSA-MIR-32-5p [56, 58, 59] ITGA6
hsa-mir-214   CREB1 TMEM245 HSA-MIR-32-5p   PTEN
hsa-mir-214   CREB1 TMEM245 HSA-MIR-32-5p [64] SEMA3A
hsa-mir-214   CREB1 TMEM245 HSA-MIR-32-5p [65] ITGAV
hsa-mir-214   CREB1 TMEM245 HSA-MIR-32-5p   MITF
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B [66] ERBB3
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B [34] ALCAM
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B   MET
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B   NCAM1
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B   PODXL
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B [63] PTEN
hsa-mir-214   CREB1 COPZ1 HSA-MIR-148B   MITF
hsa-mir-214   CREB1 CPE HSA-MIR-578   PVR
hsa-mir-214   CREB1 CPE HSA-MIR-578   PTEN
hsa-mir-214   CREB1 CHM HSA-MIR-361   PODXL
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p [64] SEMA3A
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p [63, 67] APP
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p [58] PAK2
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p   PODXL
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p   PVRL2
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p [65] TFAP2A
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p [63] ARHGAP12
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p   KDR
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p   CX3CL1
hsa-mir-214   CREB1 SMC4 HSA-MIR-15B-5p   LRP6
  1. Results are computed using miRNA targets confirmed in at least two databases. smiRNA name: source intragenic microRNA; TF: Transcription Factor; TF target (Gene): Transcription Factor target gene, which is also the host gene for a miRNA; ImiRNA: miRNA located inside the TF target gene; DG: Destination Gene, list of targets of the intragenic miRNAs predicted by at least two algorithms; Reference: data available from literature